Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs34137354 chr21:45586148 C/T 0.000116 118 38.58 51.23 28.43 KM Plot
THYM rs34142683 chr12:58347783 G/A 7.46E-13 118 42.25 27.3 6 KM Plot
THYM rs34172679 chr16:24840381 C/T 3.67E-6 118 48 28 31.37 KM Plot
THYM rs34215594 chr5:72762997 A/C 0 117 41.22 46.43 4.13 KM Plot
THYM rs34218744 chr19:29256821 A/T 0.000286 115 50.28 38.13 18.07 KM Plot
THYM rs34228473 chr8:50121662 CT/C 2.31E-10 119 46.27 50.1 25.83 KM Plot
THYM rs34228541 chr1:210577901 T/C 0.000106 116 46.43 35 26.2 KM Plot
THYM rs34238610 chr3:53026480 A/T 0.000205 118 42.73 23.8 25.63 KM Plot
THYM rs34249685 chr8:50187359 T/C 2.69E-10 118 46.07 51.53 25.83 KM Plot
THYM rs34255081 chr12:58339808 C/T 1.21E-12 116 42.73 25.6 6 KM Plot
THYM rs34326582 chr1:210533428 T/G 0.000301 118 46.6 35 NA KM Plot
THYM rs34332550 chr21:44073073 C/G 9.47E-5 118 41.77 41.05 28.43 KM Plot
THYM rs34347104 chr6:163055716 C/T 0.000281 118 46.23 27.33 25.4 KM Plot
THYM rs34364442 chr8:50071145 C/A 2.76E-10 118 48.33 49.4 25.83 KM Plot
THYM rs34364677 chr21:44081302 C/T 0.000109 117 41.22 40.23 28.43 KM Plot