Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THYM | rs34137354 | chr21:45586148 | C/T | 0.000116 | 118 | 38.58 | 51.23 | 28.43 | KM Plot |
THYM | rs34142683 | chr12:58347783 | G/A | 7.46E-13 | 118 | 42.25 | 27.3 | 6 | KM Plot |
THYM | rs34172679 | chr16:24840381 | C/T | 3.67E-6 | 118 | 48 | 28 | 31.37 | KM Plot |
THYM | rs34215594 | chr5:72762997 | A/C | 0 | 117 | 41.22 | 46.43 | 4.13 | KM Plot |
THYM | rs34218744 | chr19:29256821 | A/T | 0.000286 | 115 | 50.28 | 38.13 | 18.07 | KM Plot |
THYM | rs34228473 | chr8:50121662 | CT/C | 2.31E-10 | 119 | 46.27 | 50.1 | 25.83 | KM Plot |
THYM | rs34228541 | chr1:210577901 | T/C | 0.000106 | 116 | 46.43 | 35 | 26.2 | KM Plot |
THYM | rs34238610 | chr3:53026480 | A/T | 0.000205 | 118 | 42.73 | 23.8 | 25.63 | KM Plot |
THYM | rs34249685 | chr8:50187359 | T/C | 2.69E-10 | 118 | 46.07 | 51.53 | 25.83 | KM Plot |
THYM | rs34255081 | chr12:58339808 | C/T | 1.21E-12 | 116 | 42.73 | 25.6 | 6 | KM Plot |
THYM | rs34326582 | chr1:210533428 | T/G | 0.000301 | 118 | 46.6 | 35 | NA | KM Plot |
THYM | rs34332550 | chr21:44073073 | C/G | 9.47E-5 | 118 | 41.77 | 41.05 | 28.43 | KM Plot |
THYM | rs34347104 | chr6:163055716 | C/T | 0.000281 | 118 | 46.23 | 27.33 | 25.4 | KM Plot |
THYM | rs34364442 | chr8:50071145 | C/A | 2.76E-10 | 118 | 48.33 | 49.4 | 25.83 | KM Plot |
THYM | rs34364677 | chr21:44081302 | C/T | 0.000109 | 117 | 41.22 | 40.23 | 28.43 | KM Plot |